Knotify

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Prediction

Enter your RNA sequence here. It can be a single sequence or multiple sequences in FASTA format.

Alternatively, you can try out an example.

Options

Pseudoknot Options

Parser:

yaep

bruteforce

allow-ug

max-dd-size:

min-dd-size:

max-stem-allow-smaller:

Hairpin Options

hairpin-allow-ug

min-hairpin-size:

min-hairpin-stems:

max-hairpins-per-loop:

max-hairpin-bulge:

Energy Options

Energy:

vienna

pkenergy